CDS

Accession Number TCMCG017C25040
gbkey CDS
Protein Id OMO72725.1
Location complement(join(33271..33333,33413..33475,33558..33653,34117..34240,34434..34543,34690..34857,35029..35184,35724..35840,35930..36109,36205..36364,36448..36584,37484..37559,37660..37767,37867..37925,38021..38122,38483..38550,38626..38720,38895..38974,39091..39222,39305..39454,39535..39657,39881..39949,40320..40478,41144..41241,41347..41458,42375..42622,42832..43051,43126..43293))
GeneID InterPro:IPR001650
Organism Corchorus olitorius
locus_tag COLO4_27492

Protein

Length 1146aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01019619.1
Definition hypothetical protein COLO4_27492 [Corchorus olitorius]
Locus_tag COLO4_27492

EGGNOG-MAPPER Annotation

COG_category A
Description ATP-dependent helicase hrq1
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
KEGG_ko ko:K06877        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0000166        [VIEW IN EMBL-EBI]
GO:0000217        [VIEW IN EMBL-EBI]
GO:0000405        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003678        [VIEW IN EMBL-EBI]
GO:0003724        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004003        [VIEW IN EMBL-EBI]
GO:0004004        [VIEW IN EMBL-EBI]
GO:0004386        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005524        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008026        [VIEW IN EMBL-EBI]
GO:0008094        [VIEW IN EMBL-EBI]
GO:0008144        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008186        [VIEW IN EMBL-EBI]
GO:0009314        [VIEW IN EMBL-EBI]
GO:0009411        [VIEW IN EMBL-EBI]
GO:0009416        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010501        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017076        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0030554        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032392        [VIEW IN EMBL-EBI]
GO:0032508        [VIEW IN EMBL-EBI]
GO:0032553        [VIEW IN EMBL-EBI]
GO:0032555        [VIEW IN EMBL-EBI]
GO:0032559        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034644        [VIEW IN EMBL-EBI]
GO:0035639        [VIEW IN EMBL-EBI]
GO:0035861        [VIEW IN EMBL-EBI]
GO:0036094        [VIEW IN EMBL-EBI]
GO:0036297        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0043138        [VIEW IN EMBL-EBI]
GO:0043140        [VIEW IN EMBL-EBI]
GO:0043167        [VIEW IN EMBL-EBI]
GO:0043168        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044427        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070035        [VIEW IN EMBL-EBI]
GO:0070914        [VIEW IN EMBL-EBI]
GO:0071103        [VIEW IN EMBL-EBI]
GO:0071214        [VIEW IN EMBL-EBI]
GO:0071478        [VIEW IN EMBL-EBI]
GO:0071482        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090734        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0097367        [VIEW IN EMBL-EBI]
GO:0104004        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901255        [VIEW IN EMBL-EBI]
GO:1901265        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCCGGAAAAACCATGGCGGAGATGGCAATTGAAGTCCGAACGCTGAGCGGTGAATCTACCGTGACTACCACATCGCCAGACAAAACAATTAACGATTTCAAGCTTCTTTTGAAACTCTCTTTTCCTCCCGCCTCCTCATCTCCCAATTTCCACCTCTTCTACAAGGGCACTAAATTGAGCTCGCAAAGCAAACTAAGTAGTCTGTCGGTTCAGTGCGGTGATTTCTTGGTTTTGATTCCTTTTACTAAGAAAGACAAGCCTCGAGTTGAAAACCCTAGTTTTTCCAACAATGCAAGCACTGCCACAAGCTTTTCTGATTCCACTTACTCTGATATGATGCAAGAACTCTCATTTTTACGTGACGAATCAGTGAATTTAAGTGAAGGGGAATGTATGGTGTTAAGTGAGGCCAAATGCAGGAGTAGCAATGTACTTGCTTCCTGTCTGTGTCCTGTTTGGTTGAAGAAAATAGTGGAGGCATTTGCTTTTGTGAGCATATTGTCCGGGTTTCTTCATCTGCGAACGGATGAAATGACCTCAGCTTGTTTGAAGGGAGTGCTGGACCGTTTAGAGAAATTTGGGGTCGGCATTTCTATGGAGGACATAGACTGTCTTTCTGTTCTTTGTCCCAAGGTGGTATGTTTTCTAAATGATGATGCGGAGCCTAAAATTTTTGGTGATGCACTTGTTATCTATCGTTGTTCAACAAAGGAGGGAGACAAGTTTGATGGCAAATTCAGAGCTGGTAAAAAATATACATTTCTTTCAAAGATCTTTAGCCTAATGAAGAAAAGGGAACGTTCATTCAAAACCAGCTTGTGGAAGACAATCAAGTTGTTAATGTCGAAACAGAGATATGAGAATCTGACGTCACTTTCATTAGAGGATGTGCTCATATTTGTGAAGGAAGGTGGTGTCGTTTTGGAAAGAAACAACGTAAAGCAGGCAGGGAGAAGCTGGTGTTCTAGTTCAAAATCTCGTTCAGTCAAAAGACGATGTCATGACACAGGTCAATTGCAACCAGACGAAATGGTCGAGCATCTCAAGAAGAGCATCGGATCAGATGGGCAGCTGGTGCATGTCGAAAAAATTGCTGCTAGGAAAGCTTCCTATATGGAGATTCCTAAAGAGCTCTCGGACAACATAAAATCTGCCCTTAAGAGTATTGGAATTAATAAATTGTATAGCCACCAGGCAGAGTCAATAACAGCAACCCTTGCTGGGAAGAATGTTGTTGTGGCAACAATGACATCTAGTGGCAAATCTCTTTGCTATAATCTGCCAGTTTTGGAGCGATTGTCCCATAATTTGTCATCATGCGCACTTTACTTGTTTCCCACAAAGGCCTTGGCTCAAGACCAACTAAGAGCTTTACAATCTGTGGTAAGTGAATTAGATTGTAGCATCAATATTGGGGTATATGATGGTGACACTCCTCAGAAAGAAAGGACATGGCTTCGAGACAATGCTAGATTGTTGATCACAAATCCCGATATGTTAAACATGTCAATCCTGCCATTTCATAGAGAATTTAGTCGTATATTAACTAATCTTAGTTTTGTAGTGATTGATGAAGCTCATGCTTATAAGGGAGCTTTTGGATGTCACACTGCCCTTATACTAAGAAGACTCCGCAGGCTCTGCTCTCATGTGTATAGCAGTGATCCTTCTTTTGTTTTCTGTACGGCAACTTCTGCTAATCCTCGCGAGCACTGTATGGAACTTGCAAATCTGTCAACATTGGAGCTGATTGAAAATGATGGAAGTCCTTCTTCTGAAAAGGTTTTTGTTCTCTGGAATCCTGCTTTACGTCTCAGAACTGAAATGGATAAAAGGGTGTATGACTTAGATTCTAGAAATGCTTCAGATAAGAGTTTGAGTCCAATCTCAGAAGTTTCATACCTTTTCGCGGAAATGGTTCAGCATGGGCTCCGTTGCATTGCTTTTTGTAAATCACGTAAACTTTGTGAGCTTGTTTTATGTGATACGCGTGAAATCCTTGAAGAAACGGCTCCCCACCTTGTGAATTCCATATGTGCCTATCGTGCTGGCTATGTTGCTGAGGACCGGAGGAGAATAGAGAGAGAGTTATTTGGTGGGCAGCTCTGTGGTATTGCTGCAACAAATGCGCTTGAATTGGGAATTGATGTTGGGCATATTGATGTAACTCTGCATTTAGGCTTTCCTGGCAGTATTGCAAGCCTATGGCAGCAGGCTGGTAGGTCTGGCAGAAGAGAAAGGTCATCGCTGGCAGTTTATGTTGCATTTGAAGGGCCTCTTGATCAGTACTTTATGAAATTCCCTGAGAAACTATTCAGGAGTCCAATTGAGTGCTGTCATATTGATGCTCAAAATCAGCAGGTGCTTGAACAGCATCTGGTTTGTGCAGCTCTTGAACACCCGTTGAGTCTGCTTTATGATGAGAAATATTTTGGATCTGGTCTGAACAGTGCCATAACCACTCTTAAAAGCAGAGGATACTTAGTTTCTGATCCTTCAAGTGATTCTTTGGCTAAAATATGGAGTTACATCGGACATGAGAAAATGCCTTCACGTTCAATCAGTATACGGGCGATAGAGACAGAGAGATACATAGTAATAGATAAAGAAGAGAATGAAACCCTTGAAGAGATTGAGGAAAGCAGGGCTTTCTTTCAGGTATATGATGGTGCTGTTTACATGCACCAAGGGAGGACCTATCTGGTGAAGGATTTAGATTTATCAAGCAAAATTGCTTATTGCGAAAAAGCTGTTGTGGACTATTATACAAAGACACGTGATTATACGGACATACAAATTATTGGCGGTAAATTCGCCTATCCTGCCAGGGTCTCAAAGGACAATCTCCCAAGAACAACAGCTCAAGCAAATCCTTGCAGTGTAACGACTACATGGTTTGGCTTCCACCGAAAACGTAAAGGAAGCAACCAAATTATAGACACAGTTGATCTTTCTCTGCCTAGATTTTCATATGAATCCCAGGCAGTATGGATTAGTGTTCCAACATCCATAAAAGGAGAAGTAGAGAGGAAATACTCATTCCGTGCAGGTCTGCATGCTGCCTGTCATGCTGTTTTACATGTAGTGCCATTATATACGAGGTGCAATTTATCTGACTTGGCTCCAGAGTGTCCAAATCCTCATGATACCCGCTTCTTCCCAGAGAGGATTCTATTATATGATCAGCATCCTGGAGGTAGTGGCATCTCAAAACAGATCCAACCGTATTTCACAGAGCTTTTGCATTCTGCTTTGGAACTTTTAACATGTTGCCACTGCTCTTTAGAAACTGGTTGCCCAAATTGCATTCAGAATTTGGCTTGTCACGAGTATAATGAGCTCATACATAAAGATGCAGCCATCATGATTATTAAGGGTGTTTTGGATGCAGAAAAATCATATTTCGAAGGAAACCCTGATTCCACACCTAGCTTTTGA
Protein:  
MSGKTMAEMAIEVRTLSGESTVTTTSPDKTINDFKLLLKLSFPPASSSPNFHLFYKGTKLSSQSKLSSLSVQCGDFLVLIPFTKKDKPRVENPSFSNNASTATSFSDSTYSDMMQELSFLRDESVNLSEGECMVLSEAKCRSSNVLASCLCPVWLKKIVEAFAFVSILSGFLHLRTDEMTSACLKGVLDRLEKFGVGISMEDIDCLSVLCPKVVCFLNDDAEPKIFGDALVIYRCSTKEGDKFDGKFRAGKKYTFLSKIFSLMKKRERSFKTSLWKTIKLLMSKQRYENLTSLSLEDVLIFVKEGGVVLERNNVKQAGRSWCSSSKSRSVKRRCHDTGQLQPDEMVEHLKKSIGSDGQLVHVEKIAARKASYMEIPKELSDNIKSALKSIGINKLYSHQAESITATLAGKNVVVATMTSSGKSLCYNLPVLERLSHNLSSCALYLFPTKALAQDQLRALQSVVSELDCSINIGVYDGDTPQKERTWLRDNARLLITNPDMLNMSILPFHREFSRILTNLSFVVIDEAHAYKGAFGCHTALILRRLRRLCSHVYSSDPSFVFCTATSANPREHCMELANLSTLELIENDGSPSSEKVFVLWNPALRLRTEMDKRVYDLDSRNASDKSLSPISEVSYLFAEMVQHGLRCIAFCKSRKLCELVLCDTREILEETAPHLVNSICAYRAGYVAEDRRRIERELFGGQLCGIAATNALELGIDVGHIDVTLHLGFPGSIASLWQQAGRSGRRERSSLAVYVAFEGPLDQYFMKFPEKLFRSPIECCHIDAQNQQVLEQHLVCAALEHPLSLLYDEKYFGSGLNSAITTLKSRGYLVSDPSSDSLAKIWSYIGHEKMPSRSISIRAIETERYIVIDKEENETLEEIEESRAFFQVYDGAVYMHQGRTYLVKDLDLSSKIAYCEKAVVDYYTKTRDYTDIQIIGGKFAYPARVSKDNLPRTTAQANPCSVTTTWFGFHRKRKGSNQIIDTVDLSLPRFSYESQAVWISVPTSIKGEVERKYSFRAGLHAACHAVLHVVPLYTRCNLSDLAPECPNPHDTRFFPERILLYDQHPGGSGISKQIQPYFTELLHSALELLTCCHCSLETGCPNCIQNLACHEYNELIHKDAAIMIIKGVLDAEKSYFEGNPDSTPSF